I'd be using the DTI to set the height of the blades above the block, rather than the table, then set the table to the knives. That way you also check if the table is parallel to the block, which can of course be adjusted. You need to establish the amount of cut. Some people allow greater knife protrusion for better chip clearance but I have never been able to show any positive effect myself. Taking this argument to the limit you should set the knives to the thicknessing table as this cannot usually be adjusted, then set the surface table to the knives. I used to have to do this on my old Startrite as the thickness table was not parallel to the block.
One trick I have used is to lie a thickish feeler gauge on the blade with the ends held down on the infeed table, lowered appropriately (level with the tip). With the DTI on a mag clamp on the out feed table you then get away from the problem of measuring to the edge of the blade. Just rotate the block to the highest reading and lock it off there. If the feeler gauge is thick enough you have a bit of room to slide the DTI about without changing the reading.
Another method I use is to initially set the out feed table too high so that the wood stops against it, then lower it until it just slides over freely.
In all cases check the finished timber is straight at the end of the operation as this is the consequence of getting it wrong.