Not impossible by any means, but a bit tricky with those 0.1 mm tolerances IMO.
Does it need to be that tight?
For the square hole I would make a simple template to cut it out with the router, and then square the corners by hand. It's need to be a good template, probably plastic or alloy though, and a good register on both (?) edges of the ply. Even then a router that will give that sort of accuracy on the plunge is needed.
You could use a drill guide of the right size that fitted in the square template to drill the smaller hole, it might need reaming though for that accuracy. Not sure how well ply reams? I don't think I've ever tried.
Again you could make a centred dowel to fit the smaller hole to drill the larger one, probably with a Forstener bit.
But then that all needs some metal turning equipment, sorry.
Anyway it's just ideas.