Mike,
I built the smoker chamber as an adjunct to the main oven. Just a side chamber. It was not a perfect design, but I was starting with a thick garden wall at the back and a chimney stack. So I built two chambers (much the same as the US design for cylindrical BBQ / smokers really, where the fire is on one side (my baking/ pizza oven and fire chamber) and the smoker on the right of it. I used a shutter to redirect smoke for smoking cheese, meat, fish etc.
I would stress it was not an ideal design. I think if I were to do it again (as planned) I would think about having the smoker chamber above the oven chamber. In essence just a double floored chamber. Smoking needs a long, slow process.
For me smoking at that time was of secondary importance. Still is really. As I will keep the XXL big green egg for smoking cheese, fish, meats, etc I will probably just make a wood fired oven for baking, pizza and meat next time. You don't need the cast iron doors for pizza, but you do for bread.
If you read the artisan bread books, they are very clear that the oven is unimportant for baking (wood fired adds no flavour) as long as you can hit the temperature. I actually bake in cast iron pots as that creates steam, then remove lid for the last 20 minutes to get colour. The advantage of using cast iron / Dutch oven, apart from the steam obviously, is it evens out extreme hot spots.
Pizza takes 90 seconds max. Meat will slow cook on residual heat for 2 hours or 4 hours or whatever you want.
I also think that in these ovens, the type of wood makes no difference. The US BBQ books discuss Mesquite, Hickory, Apple, et al, but in the oven the wood is largely burnt away when cooking starts and the heat is in the bricks. It does make a big difference in the smoker side though if you direct the output that way. Hence the need for a choke.
Best of luck with it. Lots of fun cooking this way. Adrian