It's definitely a big issue with cast iron
You can set a length of waxed ply or MFC through the machine to stop bed/timber contact when thicknessing. You may still get problems if your final pressure roller is steel rather than rubber covered.
Some machines are set up to cope with green timber, I send a lot of green Chestnut and Oak through my Moretens/ Logosol ph260 four sider. It's built with nylon pads in the bed wherever there is a pressure roller, and the fences are anodised ali, so the timber comes out fine, even if the soggy chips are a bit clogging.
Weirdly, although the tannins seem corrosive initially, they do settle down and protect the metal. Fertan rust killer is tannin based, and the paintless bits on our sawmill stay a nice black colour as long as I cut Chestnut or Oak regularly. A few weeks on Douglas or Larch and the rust starts to make an appearance again....