Hello,
I have to have a wood machine safety certificate for my job. Sometimes the industry standard is not necessarily applicable to home hobbyists, but some are good sense too. Partial thickness cuts for rebating for instance, are not allowed in industry if the crown guard is removed, unless some sort of tunnel guard is employed, riving knife fitted, too.
Clearly, home woodworkers do these cuts, just running the board against the fence, hopefully taking care and realising the risks involved. Deep cutting in two passes, however, is just too risky. Things happen awful quickly on a TS and balancing a board on edge, with 3 inches of rip blade embedded in the cut, the user cannot see what is going on. Just a slight bow in the board, imperceptible, but enough to cause all sorts of binding and burning, then bang it catches. There is nothing you can do against a few horsepower and 24 teeth spinning at 4000 rpm. My blood runs cold.
To be honest, the rip cut done this way is going to need a fair bit of planing true. Why not just scrub off all the muck with a stiff brush and warm soapy water. When dry, it will probably need less of a go with a plane to get the board nice, than the former.
Mike.