There is probably a degree if differential movement of the separate wooden elements - think of a bi-metal strip. Are these long thin boxes that have to be that length, or are you gluing up long lengths to cut up later? if it's the former, then it might be a case of experimenting with various options:
1 Make sure that the wood has time to acclimatise to room temperature before gluing.
Trying to glue up in a damp, cold workshop this time of year can be fraught with problems.
2 Try clamping the larger strip to a known flat surface before gluing the other pieces . on.
3 A version of 2, but having a slight opposite curve to the surface you are clamping to..
Very much a case of accepting what is happening, but trying to counteract the worst effects